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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=biscuiteer
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='Convenience Functions for Biscuit'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biobase
r-biocgenerics
r-biocparallel
r-biscuiteerdata
r-bsseq
r-data.table
r-delayedmatrixstats
r-dmrseq
r-genomeinfodb
r-genomicranges
r-gtools
r-hdf5array
r-homo.sapiens
r-impute
r-iranges
r-matrixstats
r-mus.musculus
r-qdnaseq
r-qualv
r-r.utils
r-readr
r-rsamtools
r-rtracklayer
r-s4vectors
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biocstyle
r-covr
r-dss
r-knitr
r-markdown
r-pkgdown
r-qdnaseq.hg19
r-qdnaseq.mm10
r-rlang
r-rmarkdown
r-roxygen2
r-scmeth
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ded43343123d45189c0d3a32868cd35c92ec5f2417d4b75db36947ff58d67195')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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