PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=bnbc
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Bandwise normalization and batch correction of Hi-C data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
  r-biocgenerics
  r-data.table
  r-ebimage
  r-genomeinfodb
  r-genomicranges
  r-hicbricks
  r-iranges
  r-matrixstats
  r-preprocesscore
  r-rcpp
  r-rhdf5
  r-s4vectors
  r-summarizedexperiment
  r-sva
)
optdepends=(
  r-biocstyle
  r-bsgenome.hsapiens.ucsc.hg19
  r-knitr
  r-rmarkdown
  r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('04ca83e01ed5fa40260e072e2edda12a')
b2sums=('5dfa8c4243de77c370998af9e27a29f439edf9b3ed94a90891cedadc1c4df7ccd3da9986619b176c1fd88177c9fe7ff0306b03d8c514fdf167656e5ffee98ef5')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}