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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=borealis
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Bisulfite-seq OutlieR mEthylation At singLe-sIte reSolution"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biobase
r-bsseq
r-cowplot
r-doparallel
r-dplyr
r-dss
r-foreach
r-gamlss
r-gamlss.dist
r-genomicranges
r-ggplot2
r-plyr
r-purrr
r-r.utils
r-rlang
r-snow
)
checkdepends=(
r-biocgenerics
r-runit
)
optdepends=(
r-annotatr
r-biocgenerics
r-biocstyle
r-knitr
r-org.hs.eg.db
r-rmarkdown
r-runit
r-tidyr
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5609663e21e3cccbc1e2ddf56bf938d4')
b2sums=('54e6b5ef1c6305d41de5ef211636cd9534d55e95f8f688cb0978a65e971d66fe548d577d589ce087246c1b21ae43d2476f543dd5a6b10052aac50e9037176387')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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