PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=breastCancerVDX
_pkgver=1.44.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
  r
)
optdepends=(
  r-biobase
  r-genefu
  r-survcomp
)
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('b9c4ab9d76d527bef300fa0cfc0f7786')
b2sums=('ff343891117076a9384483d703a829243631f48f4ccc7cf09f31b9423ff8e8c932e62df6b1f377abc5d479e6a3986a97e6a3e0a3919b309a043885dfce2ba551')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}