PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=breastCancerVDX
_pkgver=1.45.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Gene expression datasets published by Wang et al. [2005] and Minn et al. [2007] (VDX)"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
  r
)
optdepends=(
  r-biobase
  r-genefu
  r-survcomp
)
source=("https://bioconductor.org/packages/release/data/experiment/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('464e88fd573fe01e97ffa08e430f2143')
b2sums=('d083fb4545500ef6418edb448cfe676f3e9feb934cfa9f5b4d7e212aec55b42834fcae262fb36a3298900425aecbf40421d6ae48eee4471fe9a0cba80f80aced')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}