PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=BridgeDbR
_pkgver=2.14.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Code for using BridgeDb identifier mapping framework from within R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('AGPL-3.0-only')
depends=(
  r-curl
  r-rjava
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('172144ba76140a2ee0f8009bce8ea152')
b2sums=('22a7d660a26fec022aca1dbb9916375709b225d8f836afcfc937e119c7cee32d4d481ad34a93210e8e019c68395f7a5f796f7747fe66c58a9c9c01d31ff1d811')

build() {
  mkdir build
  R CMD INSTALL -l build "$_pkgname"
}

package() {
  install -d "$pkgdir/usr/lib/R/library"
  cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}