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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=BSgenome
_pkgver=1.72.0
pkgname=r-${_pkgname,,}
pkgver=1.72.0
pkgrel=1
pkgdesc='Software infrastructure for efficient representation of full genomes and their SNPs'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biocgenerics
r-biocio
r-biostrings
r-genomeinfodb
r-genomicranges
r-iranges
r-matrixstats
r-rsamtools
r-rtracklayer
r-s4vectors
r-xvector
)
optdepends=(
r-biobase
r-biocmanager
r-bsgenome.celegans.ucsc.ce2
r-bsgenome.hsapiens.ncbi.grch38
r-bsgenome.hsapiens.ucsc.hg38
r-bsgenome.hsapiens.ucsc.hg38.masked
r-bsgenome.mmusculus.ucsc.mm10
r-bsgenome.rnorvegicus.ucsc.rn5
r-bsgenome.scerevisiae.ucsc.saccer1
r-bsgenomeforge
r-hgu95av2probe
r-runit
r-snplocs.hsapiens.dbsnp144.grch38
r-txdb.hsapiens.ucsc.hg38.knowngene
r-txdb.mmusculus.ucsc.mm10.knowngene
r-xtrasnplocs.hsapiens.dbsnp144.grch38
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('98541684ea234a3c102338b4a4d055817d92a088b9e67ea88b6a339fa79a4bde')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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