PKGBUILD


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51

# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=cBioPortalData
_pkgver=2.20.0
pkgname=r-${_pkgname,,}
pkgver=2.20.0
pkgrel=1
pkgdesc='Exposes and makes available data from the cBioPortal web resources'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('AGPL')
depends=(
  r
  r-anvil
  r-biocfilecache
  r-digest
  r-dplyr
  r-genomeinfodb
  r-genomicranges
  r-httr
  r-iranges
  r-multiassayexperiment
  r-raggedexperiment
  r-readr
  r-rtcgatoolbox
  r-s4vectors
  r-summarizedexperiment
  r-tcgautils
  r-tibble
  r-tidyr
)
optdepends=(
  r-biocstyle
  r-knitr
  r-rmarkdown
  r-survival
  r-survminer
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('4c2a1b341ee82e5a12f04cbd9f6d72bd0daf115b448961c1a4eca74eff6cc4c5')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: