blob: e91fef065818bb85b1e869f2917480844c0c7f4a (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
|
# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=CCPlotR
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Plots For Visualising Cell-Cell Interactions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-circlize
r-complexheatmap
r-dplyr
r-forcats
r-ggbump
r-ggh4x
r-ggplot2
r-ggraph
r-ggtext
r-igraph
r-patchwork
r-plyr
r-rcolorbrewer
r-scales
r-scatterpie
r-stringr
r-tibble
r-tidyr
r-viridis
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6b5d02b8f9e4e121e4ce989c420fb3fd')
b2sums=('f3fae039e9a2f9c9b6f53a443ee1134be62738bd9772cfcd1218f18ad2b4b9ee0c0ebdf96dc60935219d22d91b2caa21b414da275473af39617e41b93aedc417')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
|