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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=CCPlotR
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Plots For Visualising Cell-Cell Interactions"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-circlize
r-complexheatmap
r-dplyr
r-forcats
r-ggbump
r-ggh4x
r-ggplot2
r-ggraph
r-ggtext
r-igraph
r-patchwork
r-plyr
r-rcolorbrewer
r-scales
r-scatterpie
r-stringr
r-tibble
r-tidyr
r-viridis
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('568a1409688bbdcbd8041e911f45147e')
b2sums=('7f924a651dd5d866cae8afb5ab136b5829cd48f70eaa7aae5b0759975d998cb2c401ed005a3aa43a3f320cc04b858e466efe264764a12687f6816ee738853494')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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