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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CellaRepertorium
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=1.12.0
pkgrel=1
pkgdesc='Data structures, clustering and testing for single cell immune receptor repertoires (scRNAseq RepSeq/AIRR-seq)'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biocgenerics
r-biostrings
r-dplyr
r-forcats
r-generics
r-glue
r-progress
r-purrr
r-rcpp
r-reshape2
r-rlang
r-s4vectors
r-stringr
r-tibble
r-tidyr
)
optdepends=(
r-biocstyle
r-broom
r-broom.mixed
r-cowplot
r-ggdendro
r-ggplot2
r-ggraph
r-igraph
r-knitr
r-lme4
r-rcolorbrewer
r-readr
r-rmarkdown
r-scater
r-singlecellexperiment
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('022eda8fa8ffdb44f2aaed776d62d8de4db08b61acae797f2048bcb400ec3a4d')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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