blob: 253ebc14aed88c5174cc98706ed3425be9bd44e9 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
|
# system requirements: libcurl4-openssl-dev, libxml2-dev, libssl-dev,gfortran, build-essential, libz-dev, zlib1g-dev
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CeTF
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=1.16.0
pkgrel=1
pkgdesc='Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
curl
gcc-fortran
libxml2
openssl
r
zlib
r-circlize
r-clusterprofiler
r-complexheatmap
r-deseq2
r-dplyr
r-genomictools.filehandler
r-ggally
r-ggnetwork
r-ggplot2
r-ggpubr
r-ggrepel
r-igraph
r-network
r-rcpp
r-rcpparmadillo
r-rcy3
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-airway
r-kableextra
r-knitr
r-org.hs.eg.db
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('b1fffa0b80fb8d7205113f186c7f973979b044a72db009f14dd8f214b405fe6e')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|