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# system requirements: libcurl4-openssl-dev, libxml2-dev, libssl-dev,gfortran, build-essential, libz-dev, zlib1g-dev
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CeTF
_pkgver=1.14.0
pkgname=r-${_pkgname,,}
pkgver=1.14.0
pkgrel=1
pkgdesc='Coexpression for Transcription Factors using Regulatory Impact Factors and Partial Correlation and Information Theory analysis'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
curl
gcc-fortran
libxml2
openssl
r
zlib
r-circlize
r-clusterprofiler
r-complexheatmap
r-deseq2
r-dplyr
r-genomictools.filehandler
r-ggally
r-ggnetwork
r-ggplot2
r-ggpubr
r-ggrepel
r-igraph
r-network
r-rcpp
r-rcpparmadillo
r-rcy3
r-s4vectors
r-summarizedexperiment
)
optdepends=(
r-airway
r-kableextra
r-knitr
r-org.hs.eg.db
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('d250a6de29f0705dc4abee5987615c61173aa8508312c9e54c33b46379ab4087')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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