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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ChAMP
_pkgver=2.34.0
pkgname=r-${_pkgname,,}
pkgver=2.34.0
pkgrel=1
pkgdesc='Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-bumphunter
r-champdata
r-combinat
r-dendextend
r-dmrcate
r-dnacopy
r-doparallel
r-dt
r-genomicranges
r-ggplot2
r-globaltest
r-goseq
r-hmisc
r-illumina450probevariants.db
r-illuminahumanmethylation450kmanifest
r-illuminahumanmethylationepicanno.ilm10b4.hg19
r-illuminahumanmethylationepicmanifest
r-illuminaio
r-impute
r-isva
r-kpmt
r-limma
r-marray
r-matrixstats
r-minfi
r-missmethyl
r-plotly
r-plyr
r-preprocesscore
r-prettydoc
r-quadprog
r-qvalue
r-rcolorbrewer
r-rmarkdown
r-rpmm
r-shiny
r-shinythemes
r-sva
r-watermelon
)
optdepends=(
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('fbb0ac0878577a5a31954aec2621b4b6f0b6455492b370323e77d5057d1a051b')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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