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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ChemmineOB
_pkgver=1.44.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="R interface to a subset of OpenBabel functionalities"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
openbabel
r-biocgenerics
r-rcpp
r-zlibbioc
)
makedepends=(
eigen
r-bh
)
checkdepends=(
r-chemminer
r-runit
)
optdepends=(
r-biocmanager
r-biocstyle
r-chemminer
r-knitr
r-knitrbootstrap
r-rmarkdown
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('4e3f20d57c46d1ff27d1ed273ef4d4c4')
b2sums=('6f523ab5cda5aaebd3c0119d150940b473e9cc3610b62aae16ccc217aa35c2b6d32f9baf74d7b26e7cb17ec4dba6e3f81a4c369907d5608dc9bd573cbad323be')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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