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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=chihaya
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Save Delayed Operations to a HDF5 File"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-delayedarray
r-hdf5array
r-rcpp
r-rhdf5
zlib
)
makedepends=(
r-rhdf5lib
)
checkdepends=(
r-biocsingular
r-residualmatrix
r-testthat
)
optdepends=(
r-biocgenerics
r-biocsingular
r-biocstyle
r-knitr
r-residualmatrix
r-rmarkdown
r-s4vectors
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('f6a345dce45ef7f27616c9997338d302')
b2sums=('c621efee00a61803e120e8cdd94399f415ac9a2c0601d9e83ef358b529ed6c967c8bcda0563494cfe9f83cfc3c40b5a56db31daa1492fb7e23cf71965d8e9090')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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