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# system requirements: bowtie, samtools, and egrep are required for somefunctionalities
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=chimeraviz
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=1.32.0
pkgrel=1
pkgdesc='Visualization tools for gene fusions'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-annotationfilter
r-biocstyle
r-biostrings
r-checkmate
r-data.table
r-dplyr
r-dt
r-ensembldb
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-graph
r-gtools
r-gviz
r-iranges
r-magick
r-org.hs.eg.db
r-org.mm.eg.db
r-plyr
r-rcircos
r-rcolorbrewer
r-rgraphviz
r-rmarkdown
r-rsamtools
r-s4vectors
bowtie
samtools
)
optdepends=(
grep
r-devtools
r-knitr
r-lintr
r-roxygen2
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('0558154a3817d3496508597b20a44145991888190356d7d51aa7bcc9c22f961a')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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