summarylogtreecommitdiffstats
path: root/PKGBUILD
blob: e0540616ba4d84c7885902114cedadd22917a392 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=chipenrich
_pkgver=2.26.0
pkgname=r-${_pkgname,,}
pkgver=2.26.0
pkgrel=1
pkgdesc='Gene Set Enrichment For ChIP-seq Peak Data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-annotationdbi
  r-biocgenerics
  r-chipenrich.data
  r-genomeinfodb
  r-genomicranges
  r-iranges
  r-latticeextra
  r-org.dm.eg.db
  r-org.dr.eg.db
  r-org.hs.eg.db
  r-org.mm.eg.db
  r-org.rn.eg.db
  r-plyr
  r-rms
  r-rtracklayer
  r-s4vectors
  r-stringr
)
optdepends=(
  r-biocstyle
  r-devtools
  r-knitr
  r-rmarkdown
  r-roxygen2
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('a301e2e7653f599c1a0954ce4302f191432b08bb8677cdb27a16a13e4cda7586')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: