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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=ChIPseeker
_pkgver=1.40.0
pkgname=r-${_pkgname,,}
pkgver=1.40.0
pkgrel=1
pkgdesc='ChIPseeker for ChIP peak Annotation, Comparison, and Visualization'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-aplot
r-biocgenerics
r-dplyr
r-enrichplot
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-gplots
r-gtools
r-iranges
r-magrittr
r-plotrix
r-rtracklayer
r-s4vectors
r-tibble
r-txdb.hsapiens.ucsc.hg19.knowngene
r-yulab.utils
)
optdepends=(
r-clusterprofiler
r-ggimage
r-ggplotify
r-ggupset
r-ggvenndiagram
r-knitr
r-org.hs.eg.db
r-prettydoc
r-reactomepa
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('2e48e504702eb6bd6cc14c8e5f12e9836d7b1e4af4dc1be44644be7da6b43302')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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