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# system requirements: C++11
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=chromVAR
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=1.28.0
pkgrel=1
pkgdesc='Chromatin Variation Across Regions'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biocgenerics
r-biocparallel
r-biostrings
r-bsgenome
r-dt
r-genomeinfodb
r-genomicranges
r-ggplot2
r-iranges
r-miniui
r-nabor
r-plotly
r-rcolorbrewer
r-rcpp
r-rcpparmadillo
r-rsamtools
r-rtsne
r-s4vectors
r-shiny
r-summarizedexperiment
r-tfbstools
gcc
)
optdepends=(
r-bsgenome.hsapiens.ucsc.hg19
r-jaspar2016
r-knitr
r-motifmatchr
r-pheatmap
r-readr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('07ed28958f118ed88d7bbf7ed514b12742b2b2965b6fe06bb5630294a55b6857')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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