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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CINdex
_pkgver=1.32.0
pkgname=r-${_pkgname,,}
pkgver=1.32.0
pkgrel=1
pkgdesc='Chromosome Instability Index'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-bitops
r-dplyr
r-genomeinfodb
r-genomicranges
r-gplots
r-gridextra
r-iranges
r-png
r-s4vectors
r-som
r-stringr
)
optdepends=(
r-annotationhub
r-biocgenerics
r-biostrings
r-biovizbase
r-homo.sapiens
r-knitr
r-methods
r-org.hs.eg.db
r-pd.genomewidesnp.6
r-r.utils
r-reactomepa
r-rtracklayer
r-runit
r-testthat
r-txdb.hsapiens.ucsc.hg18.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('513c002396433d10eb29f1fcefeeb217fd4b266b5ac74322eb9fb797d902f8b1')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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