blob: 4d6cd6f1bcb813780cdba07023a66e71ad9f333f (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=cleanUpdTSeq
_pkgver=1.44.0
pkgname=r-${_pkgname,,}
pkgver=1.44.0
pkgrel=1
pkgdesc="cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data"
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-biostrings
r-bsgenome
r-bsgenome.drerio.ucsc.danrer7
r-e1071
r-genomeinfodb
r-genomicranges
r-iranges
r-s4vectors
r-seqinr
r-stringr
)
optdepends=(
r-biocgenerics
r-biocstyle
r-knitr
r-rmarkdown
r-runit
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('9364088a2f5e752086488ee7fed879da6383ea8d530cfea7f76388f45b871376')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|