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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=clusterExperiment
_pkgver=2.28.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Compare Clusterings for Single-Cell Sequencing"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-ape
r-biocgenerics
r-biocsingular
r-delayedarray
r-edger
r-hdf5array
r-kernlab
r-limma
r-locfdr
r-matrixstats
r-mbkmeans
r-nmf
r-phylobase
r-pracma
r-rcolorbrewer
r-rcpp
r-s4vectors
r-scales
r-singlecellexperiment
r-stringr
r-summarizedexperiment
r-zinbwave
)
optdepends=(
r-biocstyle
r-igraph
r-knitr
r-mast
r-rmarkdown
r-rtsne
r-scran
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('0f980c8ce4f86438204e28309531c152')
b2sums=('90617ef525f2add72c34a50c711061c78d284ee11bd874df9c2d86f5ac2cf325b005e31fd69da066b74b087bbe11b49b7caef517a3be7e34104656ca563a6e67')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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