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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=cn.farms
_pkgver=1.52.0
pkgname=r-${_pkgname,,}
pkgver=1.52.0
pkgrel=1
pkgdesc='cn.FARMS - factor analysis for copy number estimation'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('LGPL')
depends=(
r
r-affxparser
r-biobase
r-dbi
r-dnacopy
r-ff
r-oligo
r-oligoclasses
r-preprocesscore
r-snow
)
optdepends=(
r-pd.genomewidesnp.5
r-pd.genomewidesnp.6
r-pd.mapping250k.nsp
r-pd.mapping250k.sty
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('0debca6f0a2579f8fec61529240800fc8ce2145e52d8273a5424bc15e1321725')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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