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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CNVfilteR
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=1.18.0
pkgrel=1
pkgdesc='Identifies false positives of CNV calling tools by using SNV calls'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-assertthat
r-biostrings
r-copynumberplots
r-genomeinfodb
r-genomicranges
r-iranges
r-karyoploter
r-pracma
r-regioner
r-rsamtools
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-bsgenome.hsapiens.ucsc.hg19.masked
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('6a08f69f1949ff8c4ad90ffb0edc2c7dc403e2a09ea0d30b149c776f196e17cb')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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