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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=CNVRanger
_pkgver=1.18.1
pkgname=r-${_pkgname,,}
pkgver=1.18.1
pkgrel=1
pkgdesc='Summarization and expression/phenotype association of CNV ranges'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-biocgenerics
r-biocparallel
r-data.table
r-edger
r-gdsarray
r-gdsfmt
r-genomeinfodb
r-genomicranges
r-iranges
r-limma
r-plyr
r-qqman
r-raggedexperiment
r-rappdirs
r-reshape2
r-s4vectors
r-snprelate
r-summarizedexperiment
)
optdepends=(
r-annotationhub
r-biocstyle
r-bsgenome.btaurus.ucsc.bostau6.masked
r-complexheatmap
r-curatedtcgadata
r-ensembldb
r-grid
r-gviz
r-knitr
r-multiassayexperiment
r-org.hs.eg.db
r-regioner
r-rmarkdown
r-statmod
r-tcgautils
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('62525db41e24dfad543649cd135c84a80f21068fa66f2ca1687533654d1838f3')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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