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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=cola
_pkgver=2.10.0
pkgname=r-${_pkgname,,}
pkgver=2.10.0
pkgrel=1
pkgdesc='A Framework for Consensus Partitioning'
arch=('x86_64')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biocgenerics
r-brew
r-circlize
r-clue
r-complexheatmap
r-crayon
r-digest
r-doparallel
r-dorng
r-eulerr
r-foreach
r-getoptlong
r-globaloptions
r-httr
r-impute
r-irlba
r-knitr
r-markdown
r-matrixstats
r-mclust
r-microbenchmark
r-png
r-rcolorbrewer
r-rcpp
r-skmeans
r-xml2
)
optdepends=(
r-annotationdbi
r-biocmanager
r-clusterprofiler
r-cowplot
r-data.tree
r-dendextend
r-dose
r-e1071
r-flexclust
r-genefilter
r-gplots
r-hu6800.db
r-kohonen
r-mvtnorm
r-nmf
r-pamr
r-polychrome
r-randomforest
r-reactomepa
r-rmarkdown
r-rtsne
r-samr
r-simplifyenrichment
r-testthat
r-umap
r-wgcna
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ef7f9d7623d791c6482ee4a19d8d51b8033c39ae8ab81e9e7164685532e99e04')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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