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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=compcodeR
_pkgver=1.34.0
pkgname=r-${_pkgname,,}
pkgver=1.34.0
pkgrel=3
pkgdesc='RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-catools
r-edger
r-ggplot2
r-gplots
r-gtools
r-knitr
r-limma
r-markdown
r-modeest
r-rocr
r-sm
r-stringr
r-vioplot
tk
r-matrixstats
r-ape
r-phylolm
)
optdepends=(
r-bayseq
r-biocstyle
r-covr
r-deseq2
r-dss
r-ebseq
r-genefilter
r-ggtree
r-nbpseq
r-noiseq
r-phangorn
r-phytools
r-rmarkdown
r-rpanel
r-statmod
r-tcc
r-testthat
r-tidytree
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('f9575fddbd5a17750695c1df4f0bb394792a7755a52da5f334a0b967e2db5bb1')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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