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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=concordexR
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Calculate the concordex coefficient"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-biocparallel
r-cli
r-delayedarray
r-ggplot2
r-pheatmap
r-rlang
r-scales
)
checkdepends=(
r-biocneighbors
r-testthat
r-vdiffr
)
optdepends=(
r-biocneighbors
r-biocstyle
r-bluster
r-covr
r-knitr
r-patchwork
r-rmarkdown
r-scater
r-tenxpbmcdata
r-testthat
r-vdiffr
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('957ceda27725ac78f8ea7a1168023d96')
b2sums=('5b3f2bc4f4138ce2cfa252f20d4030f32836e2eadcfdd822c4c2ac03176ef7f8014c270a25226a63319314e83667e91ea5c223ce76bfae5072fb25b5648ad94f')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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