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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=consensusDE
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=1.24.0
pkgrel=1
pkgdesc='RNA-seq analysis using multiple algorithms'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
r
r-airway
r-annotationdbi
r-biobase
r-biocgenerics
r-biocparallel
r-biostrings
r-data.table
r-dendextend
r-deseq2
r-edaseq
r-edger
r-ensdb.hsapiens.v86
r-ensembldb
r-genomicalignments
r-genomicfeatures
r-limma
r-org.hs.eg.db
r-pcamethods
r-rcolorbrewer
r-rsamtools
r-ruvseq
r-s4vectors
r-summarizedexperiment
r-txdb.dmelanogaster.ucsc.dm3.ensgene
)
optdepends=(
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('b21ef2366396a12b7968321f8b558db844a48bc0698b472187bfb96ab638196f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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