PKGBUILD


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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=consensusOV
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=1.24.0
pkgrel=1
pkgdesc='Gene expression-based subtype classification for high-grade serous ovarian cancer'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
  r
  r-biobase
  r-gdata
  r-genefu
  r-gsva
  r-limma
  r-matrixstats
  r-randomforest
)
optdepends=(
  r-biocstyle
  r-ggplot2
  r-knitr
  r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('83faf25d57fd7418b2b22a43c14c3abd11c67c07b2b9f74ca76abc8862ef5d37')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: