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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=consICA
_pkgver=2.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="consensus Independent Component Analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocparallel
r-fastica
r-ggplot2
r-go.db
r-graph
r-org.hs.eg.db
r-pheatmap
r-rfast
r-sm
r-summarizedexperiment
r-topgo
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-seurat
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('929848b8c5a45ff0ea43c42e500e6599')
b2sums=('cc7267406d8027ab1c50c89ac56ee0909c24932841390fd1bf9c66f53eaa7990e89db73af8647b417bbab4fd890c406bd112404afacc07158f66513ea55ed77a')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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