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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=contiBAIT
_pkgver=1.30.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=2
pkgdesc="Improves Early Build Genome Assemblies using Strand-Seq Data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('BSD-2-Clause')
depends=(
r-bh
r-biocgenerics
r-biocparallel
r-clue
r-colorspace
r-data.table
r-diagram
r-dnacopy
r-exomecopy
r-genomicalignments
r-genomicfiles
r-genomicranges
r-ggplot2
r-gplots
r-gtools
r-iranges
r-rcpp
r-reshape2
r-rsamtools
r-rtracklayer
r-s4vectors
r-tsp
)
optdepends=(
r-biocstyle
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8297fd66bbfcd997be0f23cf31fcd644')
b2sums=('dfc4c8db3f7fb9af6c0d137f125c25c1650925724c540a4c387f40c9e47545e515aa189815bb2b9de7342432acc8148391d3e85c4cb5a61c1718561b232e6082')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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