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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=CoSIA
_pkgver=1.12.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An Investigation Across Different Species and Tissues"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-annotationdbi
r-annotationtools
r-biomart
r-dplyr
r-experimenthub
r-ggplot2
r-homologene
r-magrittr
r-org.ce.eg.db
r-org.dm.eg.db
r-org.dr.eg.db
r-org.hs.eg.db
r-org.mm.eg.db
r-org.rn.eg.db
r-plotly
r-rcolorbrewer
r-readr
r-stringr
r-tibble
r-tidyr
r-tidyselect
)
optdepends=(
r-biocstyle
r-knitr
r-qpdf
r-rmarkdown
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('6c89d29cf6c914bbfa6e14a09147ae46')
b2sums=('d9af75b2f1a3da33fcb9244984d5b5aa449b3e0b937b825e49be6d01a813b7ee8734546f9ec46033126f5c03dcdba551d7880652c351b83a87c726583a2e787d')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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