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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=crisprBase
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Base functions and classes for CRISPR gRNA design"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biocgenerics
r-biostrings
r-genomicranges
r-iranges
r-s4vectors
r-stringr
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3ededdeac87d15af1b5835b4d1f576ed')
b2sums=('09a4fc9eb61d42fd30193411d2e5b814828b0d3c98beb4ff359dc5e095085191d5a33f7ff266883e1c662c3bc1f5bdc75062de8f0659b3aec0879de22b8a7791')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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