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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=crisprScore
_pkgver=1.12.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-basilisk
r-basilisk.utils
r-biocgenerics
r-biostrings
r-crisprscoredata
r-iranges
r-randomforest
r-reticulate
r-stringr
r-xvector
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d677eb19990e07ad96582afd5c938575')
b2sums=('9520c53bcdd3b7d5b52842d9bfa93b93f38008fdd16243789b1a0ffb5b06151a6146751f2943d22b20bbca29c1afa02190426a02dcfaf3612054cc8b62ea32c3')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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