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# system requirements: libxml2: libxml2-dev (deb), libxml2-devel (rpm)libcurl: libcurl4-openssl-dev (deb), libcurl-devel (rpm)openssl: libssl-dev (deb), openssl-devel (rpm), libssl_dev(csw), openssl@1.1 (brew)
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=crossmeta
_pkgver=1.28.0
pkgname=r-${_pkgname,,}
pkgver=1.28.0
pkgrel=1
pkgdesc='Cross Platform Meta-Analysis of Microarray Data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
curl
libxml2
openssh
r
r-affxparser
r-affy
r-annotationdbi
r-biobase
r-biocgenerics
r-biocmanager
r-data.table
r-dbi
r-dt
r-edger
r-fdrtool
r-geoquery
r-limma
r-matrixstats
r-metama
r-miniui
r-oligo
r-rcurl
r-reader
r-readxl
r-rsqlite
r-shiny
r-shinybs
r-shinyjs
r-shinypanel
r-shinywidgets
r-stringr
r-sva
r-tibble
r-xml
)
optdepends=(
r-knitr
r-lydata
r-org.hs.eg.db
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('bd7e53eb0e20b6b7b51b4959c07bf1d00851ee1b2f277e6001adc20e17d806a3')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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