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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=cTRAP
_pkgver=1.22.0
pkgname=r-${_pkgname,,}
pkgver=1.22.0
pkgrel=1
pkgdesc='Identification of candidate causal perturbations from differential gene expression data'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-annotationdbi
r-annotationhub
r-binr
r-cowplot
r-data.table
r-dplyr
r-dt
r-fastmatch
r-fgsea
r-ggplot2
r-ggrepel
r-highcharter
r-htmltools
r-httr
r-limma
r-pbapply
r-purrr
r-qs
r-r.utils
r-readxl
r-reshape2
r-rhdf5
r-rlang
r-scales
r-shiny
r-shinycssloaders
r-tibble
)
optdepends=(
r-biomart
r-covr
r-knitr
r-remotes
r-rmarkdown
r-spelling
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('8b265ac5e30f817cfff550810a413a535b4af94dceb504ffc8af8e0bf6b23085')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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