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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=cytoviewer
_pkgver=1.6.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An interactive multi-channel image viewer for R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-archive
r-colourpicker
r-cytomapper
r-ebimage
r-rcolorbrewer
r-s4vectors
r-shiny
r-shinycssloaders
r-shinydashboard
r-singlecellexperiment
r-summarizedexperiment
r-svglite
r-svgpanzoom
r-viridis
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-markdown
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('bd28f195b0b83b1d2a8d5f44012385b7')
b2sums=('643abec6ee1e5233d775a4a2db38bf3c52af436efc222589b8128e66c62127ed0ce63ba508f35c6d513cfa8c76ed52b7e9733ddfeeeacee08f1de06c8d0af7c4')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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