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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=cytoviewer
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="An interactive multi-channel image viewer for R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-archive
r-colourpicker
r-cytomapper
r-ebimage
r-rcolorbrewer
r-s4vectors
r-shiny
r-shinycssloaders
r-shinydashboard
r-singlecellexperiment
r-summarizedexperiment
r-svglite
r-svgpanzoom
r-viridis
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-markdown
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('d1b25ac4a15756ce2ae1d41d4eb75a9c')
b2sums=('f321dcbd4c6c2520d279acfa515a46feb411fe8f49e30d7b984ebb491e3a8560b92bb6f1bed9b110c494ae4f546103d00e4c6b8ecf5e937222341e0af8f25dbd')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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