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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DAMEfinder
_pkgver=1.20.0
pkgname=r-${_pkgname,,}
pkgver=1.20.0
pkgrel=1
pkgdesc='Finds DAMEs - Differential Allelicly MEthylated regions'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('MIT')
depends=(
r
r-biocgenerics
r-biostrings
r-bumphunter
r-cowplot
r-genomeinfodb
r-genomicalignments
r-genomicranges
r-ggplot2
r-iranges
r-limma
r-plyr
r-readr
r-reshape2
r-rsamtools
r-s4vectors
r-stringr
r-summarizedexperiment
r-variantannotation
)
optdepends=(
r-biocstyle
r-bsgenome.hsapiens.ucsc.hg19
r-knitr
r-rmarkdown
r-rtracklayer
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ac1d3aa53ab3d0f7f7005807d43e868ed61ccd36baa45a4c8c4484a45f10cb9f')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
install -Dm644 "${_pkgname}/LICENSE" -t "${pkgdir}/usr/share/licenses/${pkgname}"
}
# vim:set ts=2 sw=2 et:
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