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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DAPAR
_pkgver=1.34.6
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Tools for the Differential Analysis of Proteins Abundance with R"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-apcluster
r-biobase
r-clusterprofiler
r-cp4p
r-dapardata
r-dendextend
r-diptest
r-doparallel
r-dplyr
r-factoextra
r-factominer
r-forcats
r-foreach
r-ggplot2
r-gplots
r-graph
r-highcharter
r-igraph
r-imp4p
r-impute
r-knitr
r-limma
r-lme4
r-mfuzz
r-msnbase
r-multcomp
r-norm
r-openxlsx
r-org.sc.sgd.db
r-preprocesscore
r-purrr
r-rcolorbrewer
r-readxl
r-reshape2
r-scales
r-stringr
r-tibble
r-tidyr
r-tidyverse
r-vioplot
r-visnetwork
r-vsn
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('24ecc0e3b05c61098ccc42488ec3b6ba')
b2sums=('91412ecb020321dac40251421df0e84d2afadf37c48ccec66598aff068ec2c46b09aba8a9ef18d430813d8f7bb966d9dc30024c1a5769b13ebd97d1ab2fd117c')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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