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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=dasper
_pkgver=1.9.0
pkgname=r-${_pkgname,,}
pkgver=1.9.0
pkgrel=3
pkgdesc='Detecting abberant splicing events from RNA-sequencing data'
arch=('any')
url="https://bioconductor.org/packages/3.17/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-basilisk
r-biocfilecache
r-biocparallel
r-data.table
r-dplyr
r-genomeinfodb
r-genomicfeatures
r-genomicranges
r-ggplot2
r-ggpubr
r-ggrepel
r-iranges
r-magrittr
r-megadepth
r-plyranges
r-readr
r-reticulate
r-rtracklayer
r-s4vectors
r-stringr
r-summarizedexperiment
r-tidyr
)
optdepends=(
r-annotationfilter
r-biocstyle
r-covr
r-ensembldb
r-genomicstate
r-knitr
r-lifecycle
r-markdown
r-recount
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
r-tibble
)
source=("https://bioconductor.org/packages/3.17/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('9681cb5540f6a9fb3ed1e580152a5f165257174dc6a33b29b2c52b06086db424')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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