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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=DCATS
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Differential Composition Analysis Transformed by a Similarity matrix"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-aod
r-e1071
r-matrixstats
r-mcmcpack
r-robustbase
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-knitr
r-rmarkdown
r-seurat
r-seuratobject
r-testthat
r-tidyverse
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('de7f2ed5215d0945dcb3c77705cb7394')
b2sums=('3dca33d7bc730c3dd75fd990c32d2b7e65933ecd259fbef6d5e58db1634525881aacfd883146af2455710ffe1f27189c7f8201b751ab11068a5080593136b1ef')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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