blob: d214519fbedcb2391a424040430b9085a42f27d7 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=decoupleR
_pkgver=2.16.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Ensemble of computational methods to infer biological activities from omics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-broom
r-dplyr
r-magrittr
r-parallelly
r-purrr
r-rlang
r-stringr
r-tibble
r-tidyr
r-tidyselect
r-withr
)
optdepends=(
r-aucell
r-biocstyle
r-covr
r-fgsea
r-ggplot2
r-ggrepel
r-glmnet
r-gsva
r-knitr
r-magick
r-omnipathr
r-patchwork
r-pheatmap
r-pkgdown
r-ranger
r-refmanager
r-rmarkdown
r-roxygen2
r-sessioninfo
r-seurat
r-summarizedexperiment
r-testthat
r-viper
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('3461fdd6d25feb0c5034cdec6c53b9a4')
b2sums=('571f9de90c75bc40f5a4549d1789bb04cc46b930709d40828cb8605c45d6a8797eefa81aa57af0dc98b7a9c0998410cf6cc2d4cf5bd8b3803f059fd4b9ecfc60')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
|