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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=decoupleR
_pkgver=2.9.7
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Ensemble of computational methods to infer biological activities from omics data"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-biocparallel
r-broom
r-dplyr
r-magrittr
r-parallelly
r-purrr
r-rlang
r-stringr
r-tibble
r-tidyr
r-tidyselect
r-withr
)
optdepends=(
r-aucell
r-biocstyle
r-covr
r-fgsea
r-ggplot2
r-ggrepel
r-glmnet
r-gsva
r-knitr
r-magick
r-omnipathr
r-patchwork
r-pheatmap
r-pkgdown
r-ranger
r-refmanager
r-rmarkdown
r-roxygen2
r-sessioninfo
r-seurat
r-summarizedexperiment
r-testthat
r-viper
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('952a2cef0e24d37af44d2cd09eb9597d')
b2sums=('3fbd3789d992bb542df74e78217e58ca5c1ae71c44e5e5fd79615ccb481e7b8c68ab5e39e187d5c1e6dd20f63cd5880bd656cf1128d88e78d4877d32cbb50d3e')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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