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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DegNorm
_pkgver=1.18.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="degradation normalization for RNA-seq data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('LGPL-3.0-or-later')
depends=(
blas
r-data.table
r-doparallel
r-foreach
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-heatmaply
r-iranges
r-plotly
r-plyr
r-rcpp
r-rsamtools
r-s4vectors
r-txdbmaker
r-viridis
)
makedepends=(
r-rcpparmadillo
)
optdepends=(
r-formatr
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('853c426db7b1747300d0c1db4a751b3c')
b2sums=('f1f84608250216de6e8d8fc0ae487c10e529ce79b6a7fe9315903df7e2e5e782ebcd1d809d2243764c35f8061c22487c44b0ccb1b8735b6c62b88c1ea13a02f5')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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