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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DegNorm
_pkgver=1.16.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="degradation normalization for RNA-seq data"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('LGPL-3.0-or-later')
depends=(
blas
r-data.table
r-doparallel
r-foreach
r-genomicalignments
r-genomicfeatures
r-genomicranges
r-ggplot2
r-heatmaply
r-iranges
r-plotly
r-plyr
r-rcpp
r-rsamtools
r-s4vectors
r-txdbmaker
r-viridis
)
makedepends=(
r-rcpparmadillo
)
optdepends=(
r-formatr
r-knitr
r-rmarkdown
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('8a748f1e380b01592e3ae7b67dab5db2')
b2sums=('57c2e8a9b43ceb02880ce717b618741b326d4806884eceec9ced1e29ce8e3802c3ea637e20e9d3ec6b95276630f2621d84cc9ec7f2ee7a861a656a6164a42957')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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