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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DEGreport
_pkgver=1.40.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Report of DEG analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('MIT')
depends=(
r-biobase
r-biocgenerics
r-broom
r-circlize
r-complexheatmap
r-consensusclusterplus
r-cowplot
r-dendextend
r-deseq2
r-dplyr
r-edger
r-ggdendro
r-ggplot2
r-ggrepel
r-knitr
r-logging
r-magrittr
r-psych
r-rcolorbrewer
r-reshape
r-rlang
r-s4vectors
r-scales
r-stringi
r-stringr
r-summarizedexperiment
r-tibble
r-tidyr
)
optdepends=(
r-annotationdbi
r-biocstyle
r-limma
r-pheatmap
r-rmarkdown
r-statmod
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('fe36b68a923e87bd16ec26a9013c7167')
b2sums=('4b717dbcde6d4c8485c8dd51b4d72ed839d2142af2e2e41b9ffe3e97610d46cf3cf36027ac8a1593e94b8b88ad874bdaa1c483f68b5dbde666c5c62e6e99fe80')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
install -d "$pkgdir/usr/share/licenses/$pkgname"
ln -s "/usr/lib/R/library/$_pkgname/LICENSE" "$pkgdir/usr/share/licenses/$pkgname"
}
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