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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=demuxmix
_pkgver=1.8.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-ggplot2
r-gridextra
)
checkdepends=(
r-testthat
)
optdepends=(
r-biocstyle
r-cowplot
r-dropletutils
r-knitr
r-reshape2
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('c0fd77abf91ae084a776a415876a3bea')
b2sums=('08f757f9bd35b4f231f09792edabbe6b046bc89decb57cddfe6648fd367d545057bd261338f5ee0cfef8bad143f6b27015daa6f14db74afa6d9d26c7508a68f1')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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