blob: 42b5eb4d08f7e0c5ac0687fecd103d62f4172045 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
|
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=derfinder
_pkgver=1.38.0
pkgname=r-${_pkgname,,}
pkgver=1.38.0
pkgrel=1
pkgdesc='Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-biocgenerics
r-biocparallel
r-bumphunter
r-derfinderhelper
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicfiles
r-genomicranges
r-hmisc
r-iranges
r-qvalue
r-rsamtools
r-rtracklayer
r-s4vectors
)
optdepends=(
r-biocstyle
r-covr
r-derfinderdata
r-derfinderplot
r-deseq2
r-ggplot2
r-knitr
r-limma
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('31d0ef6e605946d8cd65448c339f6f8fe4d216a2b204f2f564f623b0381095c4')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
|