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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=derfinder
_pkgver=1.40.0
pkgname=r-${_pkgname,,}
pkgver=1.40.0
pkgrel=1
pkgdesc='Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('Artistic2.0')
depends=(
r
r-annotationdbi
r-biocgenerics
r-biocparallel
r-bumphunter
r-derfinderhelper
r-genomeinfodb
r-genomicalignments
r-genomicfeatures
r-genomicfiles
r-genomicranges
r-hmisc
r-iranges
r-qvalue
r-rsamtools
r-rtracklayer
r-s4vectors
)
optdepends=(
r-biocstyle
r-covr
r-derfinderdata
r-derfinderplot
r-deseq2
r-ggplot2
r-knitr
r-limma
r-refmanager
r-rmarkdown
r-sessioninfo
r-testthat
r-txdb.hsapiens.ucsc.hg19.knowngene
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('e9448253db042811a6afbee9a8f8d534ab2504b8607550f6e1163db2169de161')
build() {
R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}
package() {
install -dm0755 "${pkgdir}/usr/lib/R/library"
cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et:
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