summarylogtreecommitdiffstats
path: root/PKGBUILD
blob: 6a1768541c731c2a73cbb79bed4f2ef3046b37c1 (plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>

_pkgname=DMCHMM
_pkgver=1.24.0
pkgname=r-${_pkgname,,}
pkgver=1.24.0
pkgrel=1
pkgdesc='Differentially Methylated CpG using Hidden Markov Model'
arch=('any')
url="https://bioconductor.org/packages/${_pkgname}"
license=('GPL')
depends=(
  r
  r-biocparallel
  r-calibrate
  r-fdrtool
  r-genomicranges
  r-iranges
  r-multcomp
  r-rtracklayer
  r-s4vectors
  r-summarizedexperiment
)
optdepends=(
  r-knitr
  r-rmarkdown
  r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
sha256sums=('ae1c3aaf22d2ca795f030e53245338d7b970b94457811ae6ae4ec5eebeb181cf')

build() {
  R CMD INSTALL ${_pkgname}_${_pkgver}.tar.gz -l "${srcdir}"
}

package() {
  install -dm0755 "${pkgdir}/usr/lib/R/library"
  cp -a --no-preserve=ownership "${_pkgname}" "${pkgdir}/usr/lib/R/library"
}
# vim:set ts=2 sw=2 et: