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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
# Contributor: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=DOSE
_pkgver=4.0.1
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Disease Ontology Semantic and Enrichment analysis"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-annotationdbi
r-biocparallel
r-fgsea
r-ggplot2
r-gosemsim
r-qvalue
r-reshape2
r-yulab.utils
)
optdepends=(
r-clusterprofiler
r-gson
r-knitr
r-memoise
r-org.hs.eg.db
r-prettydoc
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('01ff82c979d62d8476177dfee4a37ff8')
b2sums=('518fb442d62d2d146696d1b0d2886256339d5936f22eeea062df8a81856eca0fbeb2eeb1fe8333759514262d04e937c6626738545fd549eca146c78381bde60b')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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