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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=dreamlet
_pkgver=1.2.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Scalable differential expression analysis of single cell transcriptomics datasets with complex study designs"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('Artistic-2.0')
depends=(
r-ashr
r-biocgenerics
r-biocparallel
r-broom
r-data.table
r-delayedarray
r-delayedmatrixstats
r-dplyr
r-edger
r-ggbeeswarm
r-ggplot2
r-ggrepel
r-gseabase
r-gtools
r-iranges
r-irlba
r-limma
r-lme4
r-mashr
r-matrixgenerics
r-metafor
r-purrr
r-rcpp
r-rdpack
r-remacor
r-reshape2
r-rlang
r-s4vectors
r-scattermore
r-singlecellexperiment
r-sparsematrixstats
r-summarizedexperiment
r-tidyr
r-variancepartition
r-zenith
)
makedepends=(
r-beachmat
)
checkdepends=(
r-muscat
r-runit
)
optdepends=(
r-biocstyle
r-experimenthub
r-knitr
r-muscat
r-pander
r-rmarkdown
r-runit
r-scater
r-scuttle
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('83d18b989204e6bed101a1fe3fef8d18')
b2sums=('3e0fdb7ff01e89d28e859eb6be2b134350c3b04b52be654a4e150d2c7cedf20e12f7dddb64cbd10940e39cb4c5d672c801cba6277ac672e3c122860aa58f2601')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" Rscript --vanilla runTests.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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