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# Maintainer: Guoyi Zhang <guoyizhang at malacology dot net>
_pkgname=edgeR
_pkgver=4.8.2
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Empirical Analysis of Digital Gene Expression Data in R"
arch=(x86_64)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-2.0-or-later')
depends=(
blas
lapack
r-limma
r-locfit
)
optdepends=(
r-annotationdbi
r-biobase
r-biocstyle
r-jsonlite
r-knitr
r-org.hs.eg.db
r-readr
r-rhdf5
r-seuratobject
r-summarizedexperiment
r-arrow
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('5fde3f422aba2f92441e604eefb6cc55')
b2sums=('7b6766402fc070d3846644a049a6e8f70b22fe6dc66fbe14f38127e61a6f0e2d440b3f7f233b264d7f0e6ee58b4ae26c7de539b6e165dac3ff0df0bbb0a1fc37')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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