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# Maintainer: Pekka Ristola <pekkarr [at] protonmail [dot] com>
_pkgname=EDIRquery
_pkgver=1.4.0
pkgname=r-${_pkgname,,}
pkgver=${_pkgver//-/.}
pkgrel=1
pkgdesc="Query the EDIR Database For Specific Gene"
arch=(any)
url="https://bioconductor.org/packages/$_pkgname"
license=('GPL-3.0-only')
depends=(
r-genomicranges
r-interactionset
r-readr
r-tibble
r-tictoc
)
checkdepends=(
r-testthat
)
optdepends=(
r-knitr
r-rmarkdown
r-testthat
)
source=("https://bioconductor.org/packages/release/bioc/src/contrib/${_pkgname}_${_pkgver}.tar.gz")
md5sums=('e6ad43e30e4c7b865ab578a7616a9915')
b2sums=('547f92ac6cf97d1b522cecb8a180594dd580f6f36f249d99659c3b1b79155da2ed727af64dd9c8ecc839a79d6a07ab47e351d600cc20599c55901cbeca7fb283')
build() {
mkdir build
R CMD INSTALL -l build "$_pkgname"
}
check() {
cd "$_pkgname/tests"
R_LIBS="$srcdir/build" NOT_CRAN=true Rscript --vanilla testthat.R
}
package() {
install -d "$pkgdir/usr/lib/R/library"
cp -a --no-preserve=ownership "build/$_pkgname" "$pkgdir/usr/lib/R/library"
}
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